NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,641.8 |
| Mean read quality |
11.0 |
| Median read length |
3,483.0 |
| Median read quality |
12.5 |
| Number of reads |
1,006.0 |
| Read length N50 |
4,438.0 |
| STDEV read length |
1,903.5 |
| Total bases |
3,663,662.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1006 (100.0%) 3.7Mb |
| >Q7 |
995 (98.9%) 3.7Mb |
| >Q10 |
831 (82.6%) 3.3Mb |
| >Q12 |
614 (61.0%) 2.4Mb |
| >Q15 |
27 (2.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (2410) |
| 2 |
17.4 (2958) |
| 3 |
17.4 (3582) |
| 4 |
17.2 (3571) |
| 5 |
17.0 (3599) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10178 (14.8) |
| 2 |
9780 (12.3) |
| 3 |
9663 (11.9) |
| 4 |
9119 (14.0) |
| 5 |
8851 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot