NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,929.0 |
| Mean read quality |
10.1 |
| Median read length |
3,128.0 |
| Median read quality |
11.8 |
| Number of reads |
1,191.0 |
| Read length N50 |
3,884.0 |
| STDEV read length |
1,815.3 |
| Total bases |
3,488,430.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1191 (100.0%) 3.5Mb |
| >Q7 |
1159 (97.3%) 3.5Mb |
| >Q10 |
784 (65.8%) 2.8Mb |
| >Q12 |
566 (47.5%) 2.1Mb |
| >Q15 |
47 (3.9%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (2331) |
| 2 |
17.1 (2308) |
| 3 |
17.0 (3824) |
| 4 |
16.9 (4219) |
| 5 |
16.9 (6058) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9346 (13.2) |
| 2 |
8936 (10.4) |
| 3 |
8373 (12.6) |
| 4 |
8060 (13.7) |
| 5 |
7937 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot