NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,952.8 |
| Mean read quality |
11.6 |
| Median read length |
4,939.0 |
| Median read quality |
12.9 |
| Number of reads |
4,079.0 |
| Read length N50 |
5,634.0 |
| STDEV read length |
1,799.2 |
| Total bases |
20,202,659.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4079 (100.0%) 20.2Mb |
| >Q7 |
4074 (99.9%) 20.2Mb |
| >Q10 |
3659 (89.7%) 18.4Mb |
| >Q12 |
2770 (67.9%) 14.1Mb |
| >Q15 |
133 (3.3%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3156) |
| 2 |
16.2 (3232) |
| 3 |
16.1 (4610) |
| 4 |
16.0 (7635) |
| 5 |
16.0 (3070) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9523 (10.9) |
| 2 |
9518 (13.6) |
| 3 |
9512 (12.9) |
| 4 |
9486 (15.3) |
| 5 |
9478 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot