NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,869.2 |
| Mean read quality |
8.8 |
| Median read length |
3,205.0 |
| Median read quality |
11.9 |
| Number of reads |
1,414.0 |
| Read length N50 |
3,856.0 |
| STDEV read length |
1,617.6 |
| Total bases |
4,056,979.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1311 (92.7%) 3.9Mb |
| >Q7 |
1111 (78.6%) 3.7Mb |
| >Q10 |
905 (64.0%) 3.3Mb |
| >Q12 |
688 (48.7%) 2.6Mb |
| >Q15 |
56 (4.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2234) |
| 2 |
16.2 (3212) |
| 3 |
16.2 (3810) |
| 4 |
16.2 (3895) |
| 5 |
16.1 (4870) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6647 (10.4) |
| 2 |
6616 (11.8) |
| 3 |
6557 (12.0) |
| 4 |
6521 (13.5) |
| 5 |
6266 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot