NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,621.3 |
| Mean read quality |
10.9 |
| Median read length |
3,606.0 |
| Median read quality |
12.7 |
| Number of reads |
3,353.0 |
| Read length N50 |
4,511.0 |
| STDEV read length |
1,905.2 |
| Total bases |
12,142,348.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3353 (100.0%) 12.1Mb |
| >Q7 |
3296 (98.3%) 12.1Mb |
| >Q10 |
2680 (79.9%) 10.8Mb |
| >Q12 |
2045 (61.0%) 8.5Mb |
| >Q15 |
160 (4.8%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (3760) |
| 2 |
17.6 (3692) |
| 3 |
17.4 (3756) |
| 4 |
17.2 (1341) |
| 5 |
17.0 (2495) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10623 (8.5) |
| 2 |
9127 (11.2) |
| 3 |
9047 (13.4) |
| 4 |
9035 (15.5) |
| 5 |
9034 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot