NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,220.8 |
| Mean read quality |
11.9 |
| Median read length |
4,150.5 |
| Median read quality |
13.2 |
| Number of reads |
3,490.0 |
| Read length N50 |
4,642.0 |
| STDEV read length |
1,531.2 |
| Total bases |
14,730,638.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3490 (100.0%) 14.7Mb |
| >Q7 |
3474 (99.5%) 14.7Mb |
| >Q10 |
3177 (91.0%) 13.6Mb |
| >Q12 |
2604 (74.6%) 11.3Mb |
| >Q15 |
253 (7.2%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (5224) |
| 2 |
16.8 (3088) |
| 3 |
16.8 (2826) |
| 4 |
16.7 (4074) |
| 5 |
16.7 (1850) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9958 (12.8) |
| 2 |
9635 (13.3) |
| 3 |
9627 (13.6) |
| 4 |
9257 (12.2) |
| 5 |
8974 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot