NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,671.1 |
| Mean read quality |
9.9 |
| Median read length |
3,160.0 |
| Median read quality |
11.4 |
| Number of reads |
65.0 |
| Read length N50 |
3,912.0 |
| STDEV read length |
1,698.6 |
| Total bases |
173,623.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65 (100.0%) 0.2Mb |
| >Q7 |
65 (100.0%) 0.2Mb |
| >Q10 |
42 (64.6%) 0.1Mb |
| >Q12 |
25 (38.5%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.4 (3968) |
| 2 |
14.1 (2672) |
| 3 |
14.1 (4521) |
| 4 |
13.8 (3813) |
| 5 |
13.8 (3310) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5052 (12.8) |
| 2 |
4934 (8.4) |
| 3 |
4777 (9.4) |
| 4 |
4670 (11.8) |
| 5 |
4639 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot