NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,901.7 |
| Mean read quality |
11.0 |
| Median read length |
2,771.0 |
| Median read quality |
12.4 |
| Number of reads |
2,717.0 |
| Read length N50 |
3,331.0 |
| STDEV read length |
1,425.1 |
| Total bases |
7,883,926.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2717 (100.0%) 7.9Mb |
| >Q7 |
2705 (99.6%) 7.9Mb |
| >Q10 |
2277 (83.8%) 7.1Mb |
| >Q12 |
1598 (58.8%) 5.1Mb |
| >Q15 |
38 (1.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3135) |
| 2 |
17.1 (3127) |
| 3 |
17.0 (1828) |
| 4 |
16.9 (1834) |
| 5 |
16.8 (3141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9211 (13.6) |
| 2 |
9136 (13.2) |
| 3 |
8422 (12.0) |
| 4 |
8152 (10.7) |
| 5 |
7977 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot