NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,799.1 |
| Mean read quality |
12.2 |
| Median read length |
3,729.0 |
| Median read quality |
13.5 |
| Number of reads |
25,629.0 |
| Read length N50 |
4,071.0 |
| STDEV read length |
1,169.9 |
| Total bases |
97,367,109.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25629 (100.0%) 97.4Mb |
| >Q7 |
25628 (100.0%) 97.4Mb |
| >Q10 |
23650 (92.3%) 90.3Mb |
| >Q12 |
19462 (75.9%) 74.9Mb |
| >Q15 |
3859 (15.1%) 15.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (4755) |
| 2 |
17.8 (2513) |
| 3 |
17.8 (3589) |
| 4 |
17.4 (6196) |
| 5 |
17.3 (2908) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12670 (9.9) |
| 2 |
10452 (10.7) |
| 3 |
9824 (14.0) |
| 4 |
9821 (11.7) |
| 5 |
9604 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot