NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,594.8 |
| Mean read quality |
8.3 |
| Median read length |
290.0 |
| Median read quality |
8.4 |
| Number of reads |
841.0 |
| Read length N50 |
3,781.0 |
| STDEV read length |
1,869.3 |
| Total bases |
1,341,193.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
841 (100.0%) 1.3Mb |
| >Q7 |
780 (92.7%) 1.3Mb |
| >Q10 |
274 (32.6%) 1.0Mb |
| >Q12 |
161 (19.1%) 0.6Mb |
| >Q15 |
10 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2870) |
| 2 |
16.3 (3329) |
| 3 |
16.1 (1167) |
| 4 |
16.0 (765) |
| 5 |
15.9 (4014) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9418 (12.8) |
| 2 |
9306 (11.1) |
| 3 |
8616 (12.6) |
| 4 |
7420 (14.0) |
| 5 |
7161 (7.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot