NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,536.7 |
| Mean read quality |
10.1 |
| Median read length |
2,638.0 |
| Median read quality |
12.4 |
| Number of reads |
10,625.0 |
| Read length N50 |
2,871.0 |
| STDEV read length |
956.2 |
| Total bases |
26,952,887.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10260 (96.6%) 26.4Mb |
| >Q7 |
9573 (90.1%) 25.5Mb |
| >Q10 |
8256 (77.7%) 22.4Mb |
| >Q12 |
6033 (56.8%) 16.6Mb |
| >Q15 |
443 (4.2%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (2143) |
| 2 |
16.8 (2664) |
| 3 |
16.7 (3395) |
| 4 |
16.7 (3454) |
| 5 |
16.4 (2827) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7860 (10.0) |
| 2 |
6384 (8.7) |
| 3 |
6157 (9.0) |
| 4 |
5889 (6.5) |
| 5 |
5746 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot