NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,552.3 |
| Mean read quality |
11.7 |
| Median read length |
3,559.0 |
| Median read quality |
12.7 |
| Number of reads |
34,163.0 |
| Read length N50 |
3,852.0 |
| STDEV read length |
1,109.7 |
| Total bases |
121,356,971.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34163 (100.0%) 121.4Mb |
| >Q7 |
34150 (100.0%) 121.3Mb |
| >Q10 |
31704 (92.8%) 113.4Mb |
| >Q12 |
22700 (66.4%) 82.7Mb |
| >Q15 |
756 (2.2%) 2.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (292) |
| 2 |
16.8 (3570) |
| 3 |
16.8 (4672) |
| 4 |
16.5 (3352) |
| 5 |
16.5 (2703) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10085 (10.7) |
| 2 |
9805 (13.7) |
| 3 |
9747 (11.5) |
| 4 |
9559 (9.2) |
| 5 |
9451 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot