NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,604.1 |
| Mean read quality |
11.6 |
| Median read length |
3,644.0 |
| Median read quality |
13.0 |
| Number of reads |
1,176.0 |
| Read length N50 |
3,755.0 |
| STDEV read length |
1,315.7 |
| Total bases |
4,238,478.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1176 (100.0%) 4.2Mb |
| >Q7 |
1175 (99.9%) 4.2Mb |
| >Q10 |
1041 (88.5%) 3.8Mb |
| >Q12 |
799 (67.9%) 3.0Mb |
| >Q15 |
98 (8.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2089) |
| 2 |
17.0 (2813) |
| 3 |
16.7 (3734) |
| 4 |
16.6 (2844) |
| 5 |
16.4 (3274) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7211 (7.2) |
| 2 |
6874 (9.8) |
| 3 |
6761 (13.8) |
| 4 |
6709 (10.6) |
| 5 |
6705 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot