NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,712.6 |
| Mean read quality |
11.3 |
| Median read length |
4,843.5 |
| Median read quality |
12.5 |
| Number of reads |
19,236.0 |
| Read length N50 |
5,327.0 |
| STDEV read length |
1,751.7 |
| Total bases |
90,652,440.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19236 (100.0%) 90.7Mb |
| >Q7 |
19236 (100.0%) 90.7Mb |
| >Q10 |
16369 (85.1%) 79.6Mb |
| >Q12 |
11415 (59.3%) 56.3Mb |
| >Q15 |
886 (4.6%) 4.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (2775) |
| 2 |
17.6 (1964) |
| 3 |
17.4 (6505) |
| 4 |
17.4 (5921) |
| 5 |
17.3 (5295) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13728 (8.2) |
| 2 |
13530 (13.8) |
| 3 |
13218 (9.3) |
| 4 |
12882 (12.6) |
| 5 |
12306 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot