NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,300.6 |
| Mean read quality |
11.0 |
| Median read length |
4,392.0 |
| Median read quality |
12.3 |
| Number of reads |
5,813.0 |
| Read length N50 |
5,058.0 |
| STDEV read length |
1,782.7 |
| Total bases |
24,999,258.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5813 (100.0%) 25.0Mb |
| >Q7 |
5813 (100.0%) 25.0Mb |
| >Q10 |
4883 (84.0%) 21.8Mb |
| >Q12 |
3254 (56.0%) 14.9Mb |
| >Q15 |
51 (0.9%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (5592) |
| 2 |
17.0 (4567) |
| 3 |
16.4 (4603) |
| 4 |
16.3 (4559) |
| 5 |
16.2 (6560) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13363 (11.5) |
| 2 |
10354 (13.2) |
| 3 |
9735 (14.1) |
| 4 |
9554 (11.4) |
| 5 |
9283 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot