NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,829.0 |
| Mean read quality |
11.3 |
| Median read length |
3,789.0 |
| Median read quality |
12.4 |
| Number of reads |
485,133.0 |
| Read length N50 |
4,294.0 |
| STDEV read length |
1,468.6 |
| Total bases |
1,857,569,256.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
485133 (100.0%) 1857.6Mb |
| >Q7 |
485133 (100.0%) 1857.6Mb |
| >Q10 |
418247 (86.2%) 1616.5Mb |
| >Q12 |
284407 (58.6%) 1112.6Mb |
| >Q15 |
11793 (2.4%) 47.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (6660) |
| 2 |
17.2 (549) |
| 3 |
17.2 (5589) |
| 4 |
17.1 (3358) |
| 5 |
17.1 (3831) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34600 (11.2) |
| 2 |
23672 (10.4) |
| 3 |
18491 (9.6) |
| 4 |
16464 (9.5) |
| 5 |
15842 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot