NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,450.2 |
| Mean read quality |
11.2 |
| Median read length |
3,520.0 |
| Median read quality |
12.3 |
| Number of reads |
803,588.0 |
| Read length N50 |
3,795.0 |
| STDEV read length |
1,025.7 |
| Total bases |
2,772,501,650.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
803588 (100.0%) 2772.5Mb |
| >Q7 |
803588 (100.0%) 2772.5Mb |
| >Q10 |
697488 (86.8%) 2428.9Mb |
| >Q12 |
464730 (57.8%) 1640.4Mb |
| >Q15 |
5838 (0.7%) 20.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3059) |
| 2 |
16.8 (3174) |
| 3 |
16.7 (2729) |
| 4 |
16.7 (2684) |
| 5 |
16.7 (2986) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15546 (10.1) |
| 2 |
14484 (12.3) |
| 3 |
14374 (8.8) |
| 4 |
13233 (14.0) |
| 5 |
12450 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot