NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,752.3 |
| Mean read quality |
10.9 |
| Median read length |
3,908.0 |
| Median read quality |
12.1 |
| Number of reads |
16,746.0 |
| Read length N50 |
4,369.0 |
| STDEV read length |
1,543.9 |
| Total bases |
62,835,992.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16746 (100.0%) 62.8Mb |
| >Q7 |
16746 (100.0%) 62.8Mb |
| >Q10 |
13772 (82.2%) 54.5Mb |
| >Q12 |
8582 (51.2%) 35.0Mb |
| >Q15 |
68 (0.4%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (3135) |
| 2 |
16.7 (4563) |
| 3 |
16.3 (3105) |
| 4 |
16.3 (4752) |
| 5 |
15.9 (2556) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11985 (10.5) |
| 2 |
11391 (8.7) |
| 3 |
10857 (10.7) |
| 4 |
10614 (8.8) |
| 5 |
10509 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot