NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,110.2 |
| Mean read quality |
10.8 |
| Median read length |
4,092.0 |
| Median read quality |
11.9 |
| Number of reads |
687,025.0 |
| Read length N50 |
4,484.0 |
| STDEV read length |
1,331.0 |
| Total bases |
2,823,800,622.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
687025 (100.0%) 2823.8Mb |
| >Q7 |
687025 (100.0%) 2823.8Mb |
| >Q10 |
586193 (85.3%) 2429.5Mb |
| >Q12 |
316114 (46.0%) 1328.4Mb |
| >Q15 |
141 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (262) |
| 2 |
16.5 (2425) |
| 3 |
16.0 (530) |
| 4 |
16.0 (3445) |
| 5 |
15.9 (1703) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18570 (8.0) |
| 2 |
17028 (13.5) |
| 3 |
16636 (11.5) |
| 4 |
14975 (11.7) |
| 5 |
14867 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot