NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,135.3 |
| Mean read quality |
12.0 |
| Median read length |
5,256.0 |
| Median read quality |
13.3 |
| Number of reads |
36,389.0 |
| Read length N50 |
6,005.0 |
| STDEV read length |
1,731.2 |
| Total bases |
186,867,394.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36389 (100.0%) 186.9Mb |
| >Q7 |
36389 (100.0%) 186.9Mb |
| >Q10 |
33015 (90.7%) 172.2Mb |
| >Q12 |
26654 (73.2%) 140.3Mb |
| >Q15 |
3942 (10.8%) 19.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (4098) |
| 2 |
17.5 (5982) |
| 3 |
17.4 (5319) |
| 4 |
17.3 (5665) |
| 5 |
17.3 (4656) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16078 (8.6) |
| 2 |
14561 (13.9) |
| 3 |
14428 (10.0) |
| 4 |
13806 (13.0) |
| 5 |
13664 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot