NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,106.0 |
| Mean read quality |
10.5 |
| Median read length |
2,019.0 |
| Median read quality |
11.6 |
| Number of reads |
157,010.0 |
| Read length N50 |
2,566.0 |
| STDEV read length |
1,201.3 |
| Total bases |
330,657,167.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
157010 (100.0%) 330.7Mb |
| >Q7 |
157010 (100.0%) 330.7Mb |
| >Q10 |
120497 (76.7%) 268.6Mb |
| >Q12 |
65690 (41.8%) 156.3Mb |
| >Q15 |
368 (0.2%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2816) |
| 2 |
16.4 (2300) |
| 3 |
16.2 (1822) |
| 4 |
16.1 (2209) |
| 5 |
16.1 (655) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10726 (12.6) |
| 2 |
10669 (8.4) |
| 3 |
10364 (9.0) |
| 4 |
10163 (8.5) |
| 5 |
9969 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot