NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,445.8 |
| Mean read quality |
12.0 |
| Median read length |
4,378.0 |
| Median read quality |
13.3 |
| Number of reads |
934,971.0 |
| Read length N50 |
4,888.0 |
| STDEV read length |
1,506.9 |
| Total bases |
4,156,659,392.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
934971 (100.0%) 4156.7Mb |
| >Q7 |
934971 (100.0%) 4156.7Mb |
| >Q10 |
864650 (92.5%) 3866.0Mb |
| >Q12 |
694259 (74.3%) 3136.7Mb |
| >Q15 |
73140 (7.8%) 340.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (4460) |
| 2 |
18.6 (4472) |
| 3 |
18.6 (4480) |
| 4 |
18.4 (4374) |
| 5 |
18.4 (4441) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18964 (14.8) |
| 2 |
16885 (13.7) |
| 3 |
16604 (13.6) |
| 4 |
16558 (14.8) |
| 5 |
16287 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot