NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,313.5 |
| Mean read quality |
11.8 |
| Median read length |
3,559.0 |
| Median read quality |
13.0 |
| Number of reads |
342,161.0 |
| Read length N50 |
3,993.0 |
| STDEV read length |
1,243.1 |
| Total bases |
1,133,759,739.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
342161 (100.0%) 1133.8Mb |
| >Q7 |
342161 (100.0%) 1133.8Mb |
| >Q10 |
312119 (91.2%) 1044.7Mb |
| >Q12 |
241002 (70.4%) 823.8Mb |
| >Q15 |
13585 (4.0%) 48.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (2198) |
| 2 |
17.4 (3245) |
| 3 |
17.4 (3439) |
| 4 |
17.3 (2395) |
| 5 |
17.2 (3580) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12078 (13.1) |
| 2 |
11502 (9.8) |
| 3 |
11265 (14.0) |
| 4 |
11187 (8.1) |
| 5 |
11174 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot