NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,384.0 |
| Mean read quality |
11.5 |
| Median read length |
2,368.0 |
| Median read quality |
12.7 |
| Number of reads |
434,037.0 |
| Read length N50 |
2,605.0 |
| STDEV read length |
836.9 |
| Total bases |
1,034,736,506.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434037 (100.0%) 1034.7Mb |
| >Q7 |
434037 (100.0%) 1034.7Mb |
| >Q10 |
383605 (88.4%) 920.3Mb |
| >Q12 |
277131 (63.8%) 676.4Mb |
| >Q15 |
9145 (2.1%) 22.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (1666) |
| 2 |
17.4 (440) |
| 3 |
17.2 (1525) |
| 4 |
17.1 (2184) |
| 5 |
17.1 (2589) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13028 (8.9) |
| 2 |
11420 (9.0) |
| 3 |
11321 (8.8) |
| 4 |
11208 (11.0) |
| 5 |
10426 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot