NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,836.2 |
| Mean read quality |
11.9 |
| Median read length |
2,813.0 |
| Median read quality |
13.1 |
| Number of reads |
285,296.0 |
| Read length N50 |
3,078.0 |
| STDEV read length |
995.0 |
| Total bases |
809,156,410.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
285296 (100.0%) 809.2Mb |
| >Q7 |
285296 (100.0%) 809.2Mb |
| >Q10 |
260128 (91.2%) 743.3Mb |
| >Q12 |
206731 (72.5%) 601.3Mb |
| >Q15 |
11488 (4.0%) 34.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (3526) |
| 2 |
17.0 (1873) |
| 3 |
17.0 (2119) |
| 4 |
16.9 (1641) |
| 5 |
16.9 (2331) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14484 (15.1) |
| 2 |
12776 (9.1) |
| 3 |
12181 (9.7) |
| 4 |
11629 (8.9) |
| 5 |
11479 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot