NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,482.6 |
| Mean read quality |
11.6 |
| Median read length |
3,428.5 |
| Median read quality |
12.8 |
| Number of reads |
45,990.0 |
| Read length N50 |
3,905.0 |
| STDEV read length |
1,323.4 |
| Total bases |
160,166,296.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45990 (100.0%) 160.2Mb |
| >Q7 |
45990 (100.0%) 160.2Mb |
| >Q10 |
41142 (89.5%) 144.6Mb |
| >Q12 |
30455 (66.2%) 109.0Mb |
| >Q15 |
2001 (4.4%) 7.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (3047) |
| 2 |
17.8 (3689) |
| 3 |
17.7 (3487) |
| 4 |
17.6 (3561) |
| 5 |
17.6 (3323) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12748 (10.7) |
| 2 |
12480 (10.7) |
| 3 |
12120 (10.3) |
| 4 |
12085 (8.9) |
| 5 |
11650 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot