NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,462.4 |
| Mean read quality |
11.6 |
| Median read length |
3,388.5 |
| Median read quality |
12.8 |
| Number of reads |
24,484.0 |
| Read length N50 |
3,870.0 |
| STDEV read length |
1,304.9 |
| Total bases |
84,773,041.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24484 (100.0%) 84.8Mb |
| >Q7 |
24484 (100.0%) 84.8Mb |
| >Q10 |
21967 (89.7%) 76.5Mb |
| >Q12 |
16339 (66.7%) 57.8Mb |
| >Q15 |
1085 (4.4%) 3.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (4607) |
| 2 |
17.3 (2851) |
| 3 |
17.1 (2507) |
| 4 |
16.8 (3241) |
| 5 |
16.8 (2586) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13812 (9.0) |
| 2 |
12848 (11.2) |
| 3 |
11980 (8.4) |
| 4 |
11562 (9.8) |
| 5 |
10564 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot