NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,457.8 |
| Mean read quality |
11.7 |
| Median read length |
3,590.0 |
| Median read quality |
12.9 |
| Number of reads |
147,379.0 |
| Read length N50 |
4,112.0 |
| STDEV read length |
1,538.8 |
| Total bases |
509,601,416.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
147379 (100.0%) 509.6Mb |
| >Q7 |
147379 (100.0%) 509.6Mb |
| >Q10 |
134317 (91.1%) 471.1Mb |
| >Q12 |
103607 (70.3%) 377.0Mb |
| >Q15 |
2327 (1.6%) 9.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (287) |
| 2 |
16.8 (4334) |
| 3 |
16.7 (2294) |
| 4 |
16.6 (3622) |
| 5 |
16.5 (5669) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14912 (12.9) |
| 2 |
14344 (8.9) |
| 3 |
13721 (12.7) |
| 4 |
13462 (13.5) |
| 5 |
13181 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot