NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,262.7 |
| Mean read quality |
11.3 |
| Median read length |
4,458.0 |
| Median read quality |
12.5 |
| Number of reads |
1,021.0 |
| Read length N50 |
5,063.0 |
| STDEV read length |
1,825.3 |
| Total bases |
4,352,227.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1021 (100.0%) 4.4Mb |
| >Q7 |
1021 (100.0%) 4.4Mb |
| >Q10 |
888 (87.0%) 3.9Mb |
| >Q12 |
634 (62.1%) 2.9Mb |
| >Q15 |
8 (0.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (6314) |
| 2 |
15.9 (3931) |
| 3 |
15.7 (5571) |
| 4 |
15.4 (3625) |
| 5 |
15.4 (6718) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8347 (11.0) |
| 2 |
7763 (11.6) |
| 3 |
7746 (11.9) |
| 4 |
7737 (13.4) |
| 5 |
7649 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot