NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,687.1 |
| Mean read quality |
12.2 |
| Median read length |
3,665.0 |
| Median read quality |
13.4 |
| Number of reads |
47,924.0 |
| Read length N50 |
4,197.0 |
| STDEV read length |
1,481.6 |
| Total bases |
176,702,237.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
47924 (100.0%) 176.7Mb |
| >Q7 |
47924 (100.0%) 176.7Mb |
| >Q10 |
44902 (93.7%) 167.3Mb |
| >Q12 |
37498 (78.2%) 142.3Mb |
| >Q15 |
3144 (6.6%) 12.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4089) |
| 2 |
16.9 (2960) |
| 3 |
16.8 (2616) |
| 4 |
16.8 (1962) |
| 5 |
16.7 (5756) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14224 (14.5) |
| 2 |
13295 (13.7) |
| 3 |
12856 (14.2) |
| 4 |
12819 (12.7) |
| 5 |
12526 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot