NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,425.0 |
| Mean read quality |
11.4 |
| Median read length |
3,489.0 |
| Median read quality |
12.5 |
| Number of reads |
119,458.0 |
| Read length N50 |
3,778.0 |
| STDEV read length |
1,047.3 |
| Total bases |
409,144,395.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
119458 (100.0%) 409.1Mb |
| >Q7 |
119458 (100.0%) 409.1Mb |
| >Q10 |
107456 (90.0%) 371.0Mb |
| >Q12 |
75894 (63.5%) 266.1Mb |
| >Q15 |
780 (0.7%) 2.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2265) |
| 2 |
16.4 (3118) |
| 3 |
16.2 (5118) |
| 4 |
16.2 (3417) |
| 5 |
16.2 (2975) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14484 (12.3) |
| 2 |
12192 (9.3) |
| 3 |
11321 (7.8) |
| 4 |
11232 (9.1) |
| 5 |
11108 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot