NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,918.7 |
| Mean read quality |
12.4 |
| Median read length |
4,323.0 |
| Median read quality |
13.7 |
| Number of reads |
36,658.0 |
| Read length N50 |
4,478.0 |
| STDEV read length |
1,363.5 |
| Total bases |
143,649,893.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36658 (100.0%) 143.6Mb |
| >Q7 |
36658 (100.0%) 143.6Mb |
| >Q10 |
34398 (93.8%) 135.5Mb |
| >Q12 |
29250 (79.8%) 116.6Mb |
| >Q15 |
5839 (15.9%) 24.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (4415) |
| 2 |
17.6 (5019) |
| 3 |
17.5 (3317) |
| 4 |
17.5 (4874) |
| 5 |
17.4 (1893) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13799 (13.1) |
| 2 |
13008 (9.5) |
| 3 |
12769 (14.0) |
| 4 |
11854 (14.5) |
| 5 |
11725 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot