NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,167.8 |
| Mean read quality |
11.7 |
| Median read length |
3,084.5 |
| Median read quality |
12.9 |
| Number of reads |
9,146.0 |
| Read length N50 |
3,478.0 |
| STDEV read length |
1,193.0 |
| Total bases |
28,972,591.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9146 (100.0%) 29.0Mb |
| >Q7 |
9146 (100.0%) 29.0Mb |
| >Q10 |
8382 (91.6%) 26.8Mb |
| >Q12 |
6380 (69.8%) 20.8Mb |
| >Q15 |
160 (1.7%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2536) |
| 2 |
16.2 (2137) |
| 3 |
16.1 (3436) |
| 4 |
15.8 (5057) |
| 5 |
15.8 (1716) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10003 (13.7) |
| 2 |
9923 (9.3) |
| 3 |
9895 (8.6) |
| 4 |
9223 (14.1) |
| 5 |
8952 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot