NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,961.3 |
| Mean read quality |
11.1 |
| Median read length |
3,947.0 |
| Median read quality |
12.1 |
| Number of reads |
38,854.0 |
| Read length N50 |
4,376.0 |
| STDEV read length |
1,353.8 |
| Total bases |
153,912,606.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38854 (100.0%) 153.9Mb |
| >Q7 |
38854 (100.0%) 153.9Mb |
| >Q10 |
34673 (89.2%) 138.5Mb |
| >Q12 |
21001 (54.1%) 86.1Mb |
| >Q15 |
9 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (2792) |
| 2 |
15.2 (3140) |
| 3 |
15.1 (3545) |
| 4 |
15.1 (4321) |
| 5 |
15.1 (3944) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17028 (13.5) |
| 2 |
14121 (8.8) |
| 3 |
12693 (8.2) |
| 4 |
11594 (8.5) |
| 5 |
11384 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot