NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,840.9 |
| Mean read quality |
11.9 |
| Median read length |
3,833.5 |
| Median read quality |
13.1 |
| Number of reads |
8,582.0 |
| Read length N50 |
4,203.0 |
| STDEV read length |
1,229.3 |
| Total bases |
32,962,429.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8582 (100.0%) 33.0Mb |
| >Q7 |
8582 (100.0%) 33.0Mb |
| >Q10 |
7902 (92.1%) 30.8Mb |
| >Q12 |
6161 (71.8%) 24.1Mb |
| >Q15 |
532 (6.2%) 2.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2651) |
| 2 |
16.9 (3697) |
| 3 |
16.7 (2228) |
| 4 |
16.7 (3527) |
| 5 |
16.7 (3083) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11480 (11.4) |
| 2 |
10044 (9.8) |
| 3 |
9172 (13.8) |
| 4 |
9103 (14.4) |
| 5 |
9042 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot