NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,961.8 |
| Mean read quality |
12.3 |
| Median read length |
5,075.5 |
| Median read quality |
13.6 |
| Number of reads |
2,202.0 |
| Read length N50 |
5,783.0 |
| STDEV read length |
1,796.4 |
| Total bases |
10,925,969.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2202 (100.0%) 10.9Mb |
| >Q7 |
2202 (100.0%) 10.9Mb |
| >Q10 |
2053 (93.2%) 10.4Mb |
| >Q12 |
1710 (77.7%) 8.8Mb |
| >Q15 |
283 (12.9%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4933) |
| 2 |
17.0 (2501) |
| 3 |
16.9 (6271) |
| 4 |
16.9 (3350) |
| 5 |
16.9 (5081) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13299 (13.1) |
| 2 |
13294 (14.2) |
| 3 |
11045 (9.4) |
| 4 |
9493 (9.3) |
| 5 |
9399 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot