NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,870.0 |
| Mean read quality |
10.8 |
| Median read length |
1,647.5 |
| Median read quality |
12.1 |
| Number of reads |
466.0 |
| Read length N50 |
3,033.0 |
| STDEV read length |
1,550.6 |
| Total bases |
871,442.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
466 (100.0%) 0.9Mb |
| >Q7 |
466 (100.0%) 0.9Mb |
| >Q10 |
360 (77.3%) 0.8Mb |
| >Q12 |
236 (50.6%) 0.6Mb |
| >Q15 |
24 (5.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (3236) |
| 2 |
16.1 (3549) |
| 3 |
15.9 (2989) |
| 4 |
15.7 (4728) |
| 5 |
15.5 (5418) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6833 (12.1) |
| 2 |
6234 (12.1) |
| 3 |
5933 (13.5) |
| 4 |
5929 (11.1) |
| 5 |
5829 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot