NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,944.0 |
| Mean read quality |
10.8 |
| Median read length |
1,873.0 |
| Median read quality |
12.0 |
| Number of reads |
15,761.0 |
| Read length N50 |
2,457.0 |
| STDEV read length |
1,167.8 |
| Total bases |
30,639,631.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15761 (100.0%) 30.6Mb |
| >Q7 |
15761 (100.0%) 30.6Mb |
| >Q10 |
12865 (81.6%) 26.6Mb |
| >Q12 |
7821 (49.6%) 17.6Mb |
| >Q15 |
61 (0.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (655) |
| 2 |
16.0 (3013) |
| 3 |
16.0 (1587) |
| 4 |
15.9 (1979) |
| 5 |
15.8 (1562) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10364 (9.0) |
| 2 |
9202 (10.4) |
| 3 |
8475 (9.3) |
| 4 |
8423 (9.3) |
| 5 |
7771 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot