NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,707.0 |
| Mean read quality |
11.9 |
| Median read length |
2,668.0 |
| Median read quality |
13.1 |
| Number of reads |
65,078.0 |
| Read length N50 |
3,173.0 |
| STDEV read length |
1,224.1 |
| Total bases |
176,164,725.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65078 (100.0%) 176.2Mb |
| >Q7 |
65078 (100.0%) 176.2Mb |
| >Q10 |
59214 (91.0%) 162.2Mb |
| >Q12 |
47145 (72.4%) 132.5Mb |
| >Q15 |
2390 (3.7%) 7.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (2032) |
| 2 |
17.1 (1521) |
| 3 |
16.9 (3607) |
| 4 |
16.8 (1595) |
| 5 |
16.8 (2133) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11236 (11.6) |
| 2 |
11182 (14.9) |
| 3 |
10821 (8.1) |
| 4 |
10471 (10.7) |
| 5 |
10297 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot