NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,868.2 |
| Mean read quality |
11.6 |
| Median read length |
3,881.0 |
| Median read quality |
12.6 |
| Number of reads |
31,067.0 |
| Read length N50 |
4,325.0 |
| STDEV read length |
1,275.2 |
| Total bases |
120,174,727.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31067 (100.0%) 120.2Mb |
| >Q7 |
31067 (100.0%) 120.2Mb |
| >Q10 |
28503 (91.7%) 110.9Mb |
| >Q12 |
20396 (65.7%) 80.5Mb |
| >Q15 |
670 (2.2%) 2.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (4882) |
| 2 |
16.9 (4688) |
| 3 |
16.7 (2772) |
| 4 |
16.6 (3667) |
| 5 |
16.5 (3261) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13337 (13.8) |
| 2 |
13183 (11.4) |
| 3 |
11820 (12.5) |
| 4 |
11382 (13.6) |
| 5 |
11334 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot