NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,893.5 |
| Mean read quality |
11.5 |
| Median read length |
2,742.5 |
| Median read quality |
13.2 |
| Number of reads |
1,174.0 |
| Read length N50 |
3,573.0 |
| STDEV read length |
1,539.1 |
| Total bases |
3,396,926.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1174 (100.0%) 3.4Mb |
| >Q7 |
1174 (100.0%) 3.4Mb |
| >Q10 |
997 (84.9%) 3.2Mb |
| >Q12 |
813 (69.3%) 2.6Mb |
| >Q15 |
77 (6.6%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (805) |
| 2 |
16.2 (3732) |
| 3 |
16.1 (2387) |
| 4 |
16.0 (3981) |
| 5 |
15.9 (2210) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9581 (8.5) |
| 2 |
8452 (11.7) |
| 3 |
7370 (14.0) |
| 4 |
7297 (14.1) |
| 5 |
7066 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot