NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,629.9 |
| Mean read quality |
11.5 |
| Median read length |
4,697.0 |
| Median read quality |
12.6 |
| Number of reads |
26,251.0 |
| Read length N50 |
5,101.0 |
| STDEV read length |
1,509.1 |
| Total bases |
121,540,395.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26251 (100.0%) 121.5Mb |
| >Q7 |
26251 (100.0%) 121.5Mb |
| >Q10 |
23853 (90.9%) 111.4Mb |
| >Q12 |
17264 (65.8%) 81.8Mb |
| >Q15 |
271 (1.0%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (623) |
| 2 |
16.4 (6196) |
| 3 |
16.2 (5180) |
| 4 |
16.1 (4758) |
| 5 |
16.0 (4210) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15383 (13.1) |
| 2 |
15259 (13.3) |
| 3 |
15089 (11.9) |
| 4 |
14898 (7.7) |
| 5 |
13759 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot