NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,808.9 |
| Mean read quality |
11.6 |
| Median read length |
3,718.0 |
| Median read quality |
12.6 |
| Number of reads |
45,395.0 |
| Read length N50 |
4,115.0 |
| STDEV read length |
1,248.4 |
| Total bases |
172,905,558.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45395 (100.0%) 172.9Mb |
| >Q7 |
45395 (100.0%) 172.9Mb |
| >Q10 |
41590 (91.6%) 159.2Mb |
| >Q12 |
29790 (65.6%) 115.5Mb |
| >Q15 |
568 (1.3%) 2.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2443) |
| 2 |
16.5 (4432) |
| 3 |
16.3 (2398) |
| 4 |
16.3 (2826) |
| 5 |
16.3 (4143) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12754 (10.8) |
| 2 |
12684 (13.5) |
| 3 |
12320 (11.6) |
| 4 |
12051 (10.9) |
| 5 |
11924 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot