NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,267.4 |
| Mean read quality |
11.6 |
| Median read length |
3,598.0 |
| Median read quality |
12.9 |
| Number of reads |
119,881.0 |
| Read length N50 |
3,614.0 |
| STDEV read length |
939.9 |
| Total bases |
391,695,324.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
119881 (100.0%) 391.7Mb |
| >Q7 |
119881 (100.0%) 391.7Mb |
| >Q10 |
105761 (88.2%) 352.8Mb |
| >Q12 |
80378 (67.0%) 273.9Mb |
| >Q15 |
5221 (4.4%) 19.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (4473) |
| 2 |
17.2 (3626) |
| 3 |
17.1 (4468) |
| 4 |
17.0 (3650) |
| 5 |
16.9 (4571) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15776 (13.0) |
| 2 |
12358 (9.0) |
| 3 |
11535 (9.2) |
| 4 |
11406 (13.0) |
| 5 |
11116 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot