NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,502.2 |
| Mean read quality |
11.6 |
| Median read length |
3,780.0 |
| Median read quality |
13.0 |
| Number of reads |
853.0 |
| Read length N50 |
5,218.0 |
| STDEV read length |
2,354.6 |
| Total bases |
2,987,380.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
853 (100.0%) 3.0Mb |
| >Q7 |
853 (100.0%) 3.0Mb |
| >Q10 |
724 (84.9%) 2.8Mb |
| >Q12 |
559 (65.5%) 2.4Mb |
| >Q15 |
121 (14.2%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (5832) |
| 2 |
16.7 (5882) |
| 3 |
16.7 (2190) |
| 4 |
16.4 (3815) |
| 5 |
16.3 (6434) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10025 (9.5) |
| 2 |
9752 (9.7) |
| 3 |
9694 (16.2) |
| 4 |
9226 (11.5) |
| 5 |
8575 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot