NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,259.6 |
| Mean read quality |
12.1 |
| Median read length |
4,196.0 |
| Median read quality |
13.3 |
| Number of reads |
82,796.0 |
| Read length N50 |
4,741.0 |
| STDEV read length |
1,542.6 |
| Total bases |
352,674,906.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
82796 (100.0%) 352.7Mb |
| >Q7 |
82796 (100.0%) 352.7Mb |
| >Q10 |
77447 (93.5%) 331.8Mb |
| >Q12 |
63355 (76.5%) 275.0Mb |
| >Q15 |
6218 (7.5%) 28.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (4480) |
| 2 |
18.4 (4374) |
| 3 |
18.1 (3318) |
| 4 |
17.9 (5251) |
| 5 |
17.8 (4461) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16604 (13.6) |
| 2 |
14353 (11.0) |
| 3 |
14074 (9.2) |
| 4 |
14035 (11.4) |
| 5 |
13525 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot