NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,234.0 |
| Mean read quality |
11.6 |
| Median read length |
3,274.5 |
| Median read quality |
13.1 |
| Number of reads |
1,176.0 |
| Read length N50 |
3,977.0 |
| STDEV read length |
1,571.1 |
| Total bases |
3,803,203.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1176 (100.0%) 3.8Mb |
| >Q7 |
1176 (100.0%) 3.8Mb |
| >Q10 |
1029 (87.5%) 3.5Mb |
| >Q12 |
802 (68.2%) 2.9Mb |
| >Q15 |
82 (7.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (4115) |
| 2 |
16.7 (2784) |
| 3 |
16.4 (2950) |
| 4 |
16.2 (4586) |
| 5 |
16.2 (2309) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7381 (12.5) |
| 2 |
7311 (10.3) |
| 3 |
6992 (14.1) |
| 4 |
6988 (10.0) |
| 5 |
6981 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot