NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,125.2 |
| Mean read quality |
11.8 |
| Median read length |
3,338.0 |
| Median read quality |
13.1 |
| Number of reads |
31,800.0 |
| Read length N50 |
3,885.0 |
| STDEV read length |
1,314.4 |
| Total bases |
99,381,174.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31800 (100.0%) 99.4Mb |
| >Q7 |
31800 (100.0%) 99.4Mb |
| >Q10 |
29136 (91.6%) 92.1Mb |
| >Q12 |
22745 (71.5%) 74.1Mb |
| >Q15 |
1149 (3.6%) 4.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2550) |
| 2 |
16.6 (2455) |
| 3 |
16.6 (4333) |
| 4 |
16.6 (2851) |
| 5 |
16.5 (4985) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10469 (8.6) |
| 2 |
10440 (10.8) |
| 3 |
10153 (11.5) |
| 4 |
10147 (12.1) |
| 5 |
9994 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot