NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,989.6 |
| Mean read quality |
10.4 |
| Median read length |
654.5 |
| Median read quality |
11.4 |
| Number of reads |
230.0 |
| Read length N50 |
4,464.0 |
| STDEV read length |
2,115.6 |
| Total bases |
457,597.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
230 (100.0%) 0.5Mb |
| >Q7 |
230 (100.0%) 0.5Mb |
| >Q10 |
163 (70.9%) 0.4Mb |
| >Q12 |
90 (39.1%) 0.3Mb |
| >Q15 |
4 (1.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (6353) |
| 2 |
15.2 (4888) |
| 3 |
15.2 (3806) |
| 4 |
15.0 (5291) |
| 5 |
15.0 (7787) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11233 (12.2) |
| 2 |
7787 (15.0) |
| 3 |
7705 (9.3) |
| 4 |
7256 (12.6) |
| 5 |
7208 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot