NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,670.0 |
| Mean read quality |
10.9 |
| Median read length |
2,720.0 |
| Median read quality |
12.2 |
| Number of reads |
763.0 |
| Read length N50 |
4,411.0 |
| STDEV read length |
2,064.5 |
| Total bases |
2,037,236.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
763 (100.0%) 2.0Mb |
| >Q7 |
763 (100.0%) 2.0Mb |
| >Q10 |
603 (79.0%) 1.9Mb |
| >Q12 |
398 (52.2%) 1.5Mb |
| >Q15 |
41 (5.4%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2359) |
| 2 |
16.1 (3354) |
| 3 |
16.0 (3127) |
| 4 |
16.0 (4001) |
| 5 |
15.9 (4546) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8731 (14.2) |
| 2 |
8005 (12.2) |
| 3 |
7891 (14.3) |
| 4 |
7440 (11.3) |
| 5 |
7417 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot